Year: 2016
Species: Bobcat
Study Site: SN east side cells
Metadata Summary:
| n_sites | N_detections | rep_period | model_agg_M | iterations | burnin | thin | state_buffer |
|---|---|---|---|---|---|---|---|
| 19 | 6 | 7 days | 300 | 350000 | 20000 | 20 | 2.5 |
WAIC
Models by WAIC:| model | description | WAIC |
|---|---|---|
| sc.fm1 | dot model | 60.73971 |
| sc.fm2.3 | pass | 63.90897 |
| sc.fm2.1 | snow | 65.07062 |
| sc.fm2.2 | temp | 65.32877 |
| sc.fm2.0 | lure | 66.11828 |
| sc.fm3.1 | lure + pass | 66.24677 |
| sc.fm4.2 | lure + snow + temp + pass | 67.25426 |
| sc.fm5.1 | lure + snow + temp + pass + lure * snow | 67.45554 |
| sc.fm4.0 | lure + snow + temp | 67.49012 |
| sc.fm3.0 | lure + snow | 67.49747 |
| sc.fm5.0 | lure + snow + temp + pass + temp * snow | 68.77032 |
Reversible Jump MCMC:
sc.fm6.0 model: (reverse jump) lure + snow + temp + pass + temp * snow + lure * snow| cov | indicator_mean |
|---|---|
| psi.ind | 0.12512 |
| beta.ind[1] | 0.00358 |
| beta.ind[2] | 0.00164 |
| beta.ind[3] | 0.00073 |
| beta.ind[6] | 0.00012 |
| beta.ind[4] | 0.00000 |
| beta.ind[5] | 0.00000 |
| cov | indicator_mean |
|---|---|
| beta.ind[4] | 0.15430 |
| psi.ind | 0.14784 |
| beta.ind[1] | 0.00345 |
| beta.ind[2] | 0.00273 |
| beta.ind[5] | 0.00176 |
| beta.ind[6] | 0.00127 |
| beta.ind[3] | 0.00036 |
| cov | indicator_mean |
|---|---|
| psi.ind | 0.16951 |
| beta.ind[1] | 0.00491 |
| beta.ind[2] | 0.00436 |
| beta.ind[3] | 0.00073 |
| beta.ind[4] | 0.00000 |
Model summaries:
sc.fm1 summary:
dot model
summary table
| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 52 | 43.766 | 3.868 | 3.0 | 139.00 | 0 |
| D | 52 | 24.789 | 2.191 | 1.7 | 78.73 | 0 |
| sigma | 12626 | 1.122 | 1.118 | 0.9 | 1.36 | 0 |
| lam0 | 696 | 0.068 | 0.003 | 0.0 | 0.13 | 0 |
N
D
sigma
lam0
sc.fm2.0 summary:
lure
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 72 | 150.655 | 8.806 | 5.00 | 271.00 | 0.00000 |
| D | 72 | 85.333 | 4.988 | 2.83 | 153.50 | 0.00000 |
| sigma | 16500 | 1.169 | 1.167 | 0.94 | 1.39 | 0.00000 |
| beta0.lam0 | 142 | -6.372 | -6.748 | -8.21 | -4.45 | 0.00000 |
| beta.lam0[1] | 16500 | -1.637 | -1.061 | -3.27 | 0.17 | 0.51599 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.1 summary:
snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 60 | 134.607 | 9.677 | 4.00 | 267.00 | 0.00000 |
| D | 60 | 76.243 | 5.481 | 1.70 | 150.67 | 0.00000 |
| sigma | 14996 | 1.171 | 1.177 | 0.95 | 1.40 | 0.00000 |
| beta0.lam0 | 113 | -6.111 | -6.623 | -8.02 | -4.12 | 0.00000 |
| beta.lam0[1] | 16500 | 0.877 | 0.640 | -0.23 | 1.93 | 0.52225 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.2 summary:
temp
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 71 | 140.744 | 10.548 | 5.00 | 270.00 | 0.00000 |
| D | 71 | 79.719 | 5.975 | 2.83 | 152.93 | 0.00000 |
| sigma | 16500 | 1.170 | 1.184 | 0.95 | 1.40 | 0.00000 |
| beta0.lam0 | 135 | -5.927 | -6.389 | -7.60 | -4.17 | 0.00028 |
| beta.lam0[1] | 15982 | -0.065 | -0.025 | -0.77 | 0.57 | 0.99962 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.3 summary:
pass
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 70 | 140.992 | 9.677 | 4.00 | 265.00 | 0.00000 |
| D | 70 | 79.860 | 5.481 | 2.27 | 150.10 | 0.00000 |
| sigma | 16887 | 1.169 | 1.157 | 0.95 | 1.40 | 0.00000 |
| beta0.lam0 | 112 | -5.831 | -6.394 | -7.55 | -4.02 | 0.00000 |
| beta.lam0[1] | 16500 | 0.318 | 2.337 | -160.45 | 156.61 | 0.99984 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm3.0 summary:
lure + snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 64 | 143.301 | 11.129 | 6.00 | 268.00 | 0.00000 |
| D | 64 | 81.167 | 6.304 | 3.40 | 151.80 | 0.00000 |
| sigma | 16500 | 1.169 | 1.182 | 0.94 | 1.39 | 0.00000 |
| beta0.lam0 | 133 | -6.619 | -7.041 | -8.57 | -4.64 | 0.00000 |
| beta.lam0[1] | 16500 | -1.491 | -0.919 | -3.09 | 0.30 | 0.70683 |
| beta.lam0[2] | 16632 | 0.737 | 0.476 | -0.36 | 1.77 | 0.68741 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
sc.fm3.1 summary:
lure + pass
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 72 | 137.461 | 35.516 | 7.00 | 269.00 | 0.00000 |
| D | 72 | 77.860 | 20.117 | 3.96 | 152.36 | 0.00000 |
| sigma | 16500 | 1.172 | 1.177 | 0.95 | 1.40 | 0.00000 |
| beta0.lam0 | 162 | -6.289 | -6.640 | -8.06 | -4.46 | 0.00000 |
| beta.lam0[1] | 16500 | -1.646 | -0.902 | -3.29 | 0.19 | 0.51793 |
| beta.lam0[2] | 16500 | 0.758 | 16.974 | -162.54 | 159.67 | 0.98024 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
sc.fm4.0 summary:
lure + snow + temp
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 81 | 161.317 | 287.516 | 46.00 | 300.00 | 0.00000 |
| D | 81 | 91.372 | 162.852 | 26.05 | 169.92 | 0.00000 |
| sigma | 16000 | 1.171 | 1.151 | 0.94 | 1.39 | 0.00000 |
| beta0.lam0 | 235 | -7.218 | -7.316 | -9.06 | -5.33 | 0.00000 |
| beta.lam0[1] | 16500 | -1.625 | -1.207 | -3.32 | 0.37 | 0.64155 |
| beta.lam0[2] | 16500 | 1.645 | 1.423 | 0.12 | 3.11 | 0.21485 |
| beta.lam0[3] | 16500 | 1.252 | 1.194 | -0.19 | 2.65 | 0.40772 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
sc.fm4.2 summary:
lure + snow + temp + pass
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 81 | 119.008 | 12.290 | 4.00 | 239.00 | 0.00000 |
| D | 81 | 67.407 | 6.961 | 2.27 | 135.37 | 0.00000 |
| sigma | 16500 | 1.170 | 1.172 | 0.94 | 1.40 | 0.00000 |
| beta0.lam0 | 199 | -6.767 | -7.036 | -8.81 | -4.54 | 0.00000 |
| beta.lam0[1] | 16500 | -1.618 | -1.262 | -3.39 | 0.33 | 0.64460 |
| beta.lam0[2] | 16500 | 1.643 | 1.528 | 0.13 | 3.12 | 0.22617 |
| beta.lam0[3] | 16500 | 1.239 | 1.026 | -0.21 | 2.66 | 0.41744 |
| beta.lam0[4] | 16136 | -1.272 | -8.064 | -158.45 | 160.07 | 0.99772 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
sc.fm5.0 summary:
lure + snow + temp + pass + temp * snow
summary table
| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 70 | 127.791 | 11.419 | 3.00 | 263.00 | 0.00000 |
| D | 70 | 72.382 | 6.468 | 1.70 | 148.97 | 0.00000 |
| sigma | 16500 | 1.170 | 1.175 | 0.95 | 1.40 | 0.00000 |
| beta0.lam0 | 173 | -6.472 | -6.833 | -8.74 | -4.10 | 0.00000 |
| beta.lam0[1] | 16164 | -1.741 | -1.147 | -3.54 | 0.30 | 0.59772 |
| beta.lam0[2] | 16500 | 1.259 | 1.025 | -0.32 | 2.76 | 0.52387 |
| beta.lam0[3] | 16500 | 1.434 | 1.274 | 0.03 | 2.83 | 0.26740 |
| beta.lam0[4] | 16500 | -0.070 | -4.704 | -156.83 | 164.46 | 0.99888 |
| beta.lam0[5] | 16500 | 0.856 | 0.772 | -0.40 | 2.15 | 0.59192 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
beta.lam0[5]
sc.fm5.1 summary:
lure + snow + temp + pass + lure * snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 64 | 145.359 | 12.290 | 6.00 | 272.00 | 0.00000 |
| D | 64 | 82.333 | 6.961 | 3.40 | 154.06 | 0.00000 |
| sigma | 15291 | 1.171 | 1.157 | 0.94 | 1.39 | 0.00000 |
| beta0.lam0 | 192 | -7.474 | -7.632 | -9.73 | -5.22 | 0.00000 |
| beta.lam0[1] | 16500 | -2.110 | -1.602 | -4.24 | 0.18 | 0.46539 |
| beta.lam0[2] | 16500 | 1.578 | 1.412 | -0.06 | 3.19 | 0.30294 |
| beta.lam0[3] | 16500 | 1.250 | 1.036 | -0.32 | 2.68 | 0.44471 |
| beta.lam0[4] | 16500 | -0.457 | -0.673 | -160.58 | 159.68 | 0.99999 |
| beta.lam0[5] | 16500 | -1.036 | -0.953 | -2.73 | 0.63 | 0.51301 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
beta.lam0[5]
