Year: 2016
Species: AmericanMarten
Study Site: SN east side cells
Metadata Summary:
| n_sites | N_detections | rep_period | model_agg_M | iterations | burnin | thin | state_buffer |
|---|---|---|---|---|---|---|---|
| 19 | 46 | 7 days | 300 | 350000 | 20000 | 20 | 2.5 |
WAIC
Models by WAIC:| model | description | WAIC |
|---|---|---|
| sc.fm2.0 | lure | 278.9063 |
| sc.fm2.2 | temp | 279.1302 |
| sc.fm3.1 | lure + pass | 279.4575 |
| sc.fm1 | dot model | 279.4672 |
| sc.fm3.0 | lure + snow | 279.5076 |
| sc.fm4.2 | lure + snow + temp + pass | 280.4676 |
| sc.fm2.1 | snow | 280.5230 |
| sc.fm4.0 | lure + snow + temp | 280.8454 |
| sc.fm2.3 | pass | 280.8708 |
| sc.fm5.0 | lure + snow + temp + pass + temp * snow | 281.5078 |
| sc.fm5.1 | lure + snow + temp + pass + lure * snow | 281.9797 |
Reversible Jump MCMC:
sc.fm6.0 model: (reverse jump) lure + snow + temp + pass + temp * snow + lure * snow| cov | indicator_mean |
|---|---|
| psi.ind | 0.12593 |
| beta.ind[1] | 0.00406 |
| beta.ind[3] | 0.00212 |
| beta.ind[2] | 0.00097 |
| beta.ind[6] | 0.00006 |
| beta.ind[4] | 0.00000 |
| beta.ind[5] | 0.00000 |
| cov | indicator_mean |
|---|---|
| psi.ind | 0.14415 |
| beta.ind[4] | 0.13691 |
| beta.ind[1] | 0.00491 |
| beta.ind[5] | 0.00436 |
| beta.ind[3] | 0.00285 |
| beta.ind[6] | 0.00073 |
| beta.ind[2] | 0.00061 |
| cov | indicator_mean |
|---|---|
| psi.ind | 0.16782 |
| beta.ind[1] | 0.00515 |
| beta.ind[3] | 0.00412 |
| beta.ind[2] | 0.00133 |
| beta.ind[4] | 0.00000 |
Model summaries:
sc.fm1 summary:
dot model
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 277 | 41.403 | 23.854 | 10.00 | 74.00 | 0 |
| D | 277 | 23.451 | 13.511 | 5.10 | 41.35 | 0 |
| sigma | 1181 | 0.676 | 0.672 | 0.47 | 0.89 | 0 |
| lam0 | 1886 | 0.247 | 0.175 | 0.07 | 0.41 | 0 |
N
D
sigma
lam0
sc.fm2.0 summary:
lure
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 236 | 53.675 | 30.034 | 13.00 | 96.00 | 0.00000 |
| D | 236 | 30.402 | 17.012 | 7.36 | 54.38 | 0.00000 |
| sigma | 1979 | 0.680 | 0.687 | 0.47 | 0.89 | 0.00000 |
| beta0.lam0 | 804 | -1.960 | -1.801 | -2.80 | -1.07 | 0.00053 |
| beta.lam0[1] | 16500 | -0.647 | -0.622 | -1.16 | -0.08 | 0.17236 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.1 summary:
snow
summary table
| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 219 | 52.240 | 28.416 | 11.00 | 93.00 | 0.00000 |
| D | 219 | 29.589 | 16.095 | 6.23 | 52.68 | 0.00000 |
| sigma | 1774 | 0.682 | 0.688 | 0.48 | 0.90 | 0.00000 |
| beta0.lam0 | 527 | -1.863 | -1.719 | -2.76 | -0.99 | 0.00251 |
| beta.lam0[1] | 16500 | 0.240 | 0.256 | -0.03 | 0.50 | 0.38879 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.2 summary:
temp
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 166 | 61.930 | 30.909 | 10.00 | 123.00 | 0.00000 |
| D | 166 | 35.078 | 17.507 | 5.66 | 69.67 | 0.00000 |
| sigma | 1142 | 0.673 | 0.689 | 0.46 | 0.89 | 0.00000 |
| beta0.lam0 | 464 | -2.001 | -1.824 | -3.00 | -1.01 | 0.00392 |
| beta.lam0[1] | 16500 | -0.350 | -0.338 | -0.63 | -0.08 | 0.11950 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.3 summary:
pass
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 221 | 52.107 | 31.064 | 12.00 | 94.00 | 0.00000 |
| D | 221 | 29.514 | 17.595 | 5.66 | 52.11 | 0.00000 |
| sigma | 1548 | 0.684 | 0.698 | 0.48 | 0.90 | 0.00000 |
| beta0.lam0 | 656 | -1.839 | -1.734 | -2.69 | -0.95 | 0.00192 |
| beta.lam0[1] | 16500 | -1.136 | -1.768 | -156.37 | 165.91 | 0.99988 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm3.0 summary:
lure + snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 146 | 52.865 | 27.842 | 12.00 | 97.00 | 0.00000 |
| D | 146 | 29.943 | 15.770 | 6.80 | 54.94 | 0.00000 |
| sigma | 1424 | 0.683 | 0.673 | 0.47 | 0.89 | 0.00000 |
| beta0.lam0 | 516 | -1.928 | -1.785 | -2.78 | -1.01 | 0.00081 |
| beta.lam0[1] | 16500 | -0.567 | -0.488 | -1.12 | -0.02 | 0.32150 |
| beta.lam0[2] | 16500 | 0.161 | 0.149 | -0.12 | 0.43 | 0.72432 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
sc.fm3.1 summary:
lure + pass
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 168 | 60.460 | 31.578 | 12.00 | 118.00 | 0.00000 |
| D | 168 | 34.245 | 17.886 | 5.66 | 65.70 | 0.00000 |
| sigma | 1403 | 0.673 | 0.681 | 0.46 | 0.89 | 0.00000 |
| beta0.lam0 | 412 | -2.004 | -1.786 | -2.98 | -1.10 | 0.00206 |
| beta.lam0[1] | 16500 | -0.645 | -0.628 | -1.17 | -0.09 | 0.16427 |
| beta.lam0[2] | 17119 | 0.644 | -2.794 | -160.95 | 156.31 | 0.99962 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
sc.fm4.0 summary:
lure + snow + temp
summary table
| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 107 | 63.159 | 30.199 | 10.00 | 122.00 | 0.00000 |
| D | 107 | 35.774 | 17.105 | 5.66 | 69.10 | 0.00000 |
| sigma | 1481 | 0.674 | 0.662 | 0.46 | 0.89 | 0.00000 |
| beta0.lam0 | 295 | -2.063 | -1.827 | -3.07 | -1.08 | 0.00228 |
| beta.lam0[1] | 16500 | -0.479 | -0.399 | -1.00 | 0.04 | 0.43275 |
| beta.lam0[2] | 16500 | 0.027 | 0.013 | -0.30 | 0.37 | 0.99821 |
| beta.lam0[3] | 15541 | -0.262 | -0.251 | -0.60 | 0.06 | 0.47427 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
sc.fm4.2 summary:
lure + snow + temp + pass
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 208 | 58.434 | 31.619 | 12.00 | 108.00 | 0.00000 |
| D | 208 | 33.097 | 17.909 | 6.80 | 61.17 | 0.00000 |
| sigma | 1462 | 0.672 | 0.677 | 0.46 | 0.89 | 0.00000 |
| beta0.lam0 | 581 | -2.050 | -1.913 | -2.99 | -1.18 | 0.00144 |
| beta.lam0[1] | 16500 | -0.480 | -0.331 | -0.97 | 0.05 | 0.44457 |
| beta.lam0[2] | 16074 | 0.023 | 0.016 | -0.31 | 0.36 | 0.99537 |
| beta.lam0[3] | 15672 | -0.266 | -0.262 | -0.59 | 0.06 | 0.42471 |
| beta.lam0[4] | 16500 | 0.809 | -4.045 | -154.76 | 162.12 | 0.99874 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
sc.fm5.0 summary:
lure + snow + temp + pass + temp * snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 165 | 56.639 | 29.199 | 11.00 | 104.00 | 0.00000 |
| D | 165 | 32.081 | 16.539 | 5.66 | 58.34 | 0.00000 |
| sigma | 1316 | 0.676 | 0.663 | 0.46 | 0.89 | 0.00000 |
| beta0.lam0 | 499 | -1.884 | -1.805 | -2.80 | -0.92 | 0.00328 |
| beta.lam0[1] | 16500 | -0.491 | -0.355 | -1.01 | 0.04 | 0.45994 |
| beta.lam0[2] | 16500 | -0.016 | -0.021 | -0.35 | 0.32 | 0.99399 |
| beta.lam0[3] | 16500 | -0.097 | -0.086 | -0.51 | 0.30 | 0.94442 |
| beta.lam0[4] | 16449 | 1.087 | 3.151 | -153.28 | 165.84 | 0.99952 |
| beta.lam0[5] | 16500 | 0.243 | 0.270 | -0.11 | 0.60 | 0.54745 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
beta.lam0[5]
sc.fm5.1 summary:
lure + snow + temp + pass + lure * snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 217 | 54.350 | 30.172 | 12.00 | 100.00 | 0.00000 |
| D | 217 | 30.785 | 17.090 | 6.23 | 56.07 | 0.00000 |
| sigma | 1628 | 0.679 | 0.657 | 0.47 | 0.89 | 0.00000 |
| beta0.lam0 | 611 | -2.010 | -1.897 | -2.93 | -1.10 | 0.00013 |
| beta.lam0[1] | 15936 | -0.509 | -0.376 | -1.02 | 0.05 | 0.41709 |
| beta.lam0[2] | 16204 | 0.038 | 0.052 | -0.30 | 0.38 | 0.94704 |
| beta.lam0[3] | 16500 | -0.263 | -0.277 | -0.60 | 0.06 | 0.48484 |
| beta.lam0[4] | 16500 | 0.506 | -4.789 | -155.09 | 163.21 | 0.99839 |
| beta.lam0[5] | 16500 | 0.039 | 0.002 | -0.55 | 0.61 | 0.99996 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
beta.lam0[5]
