Year: 2016
Species: Coyote
Study Site: SN east side cells
Metadata Summary:
| n_sites | N_detections | rep_period | model_agg_M | iterations | burnin | thin | state_buffer |
|---|---|---|---|---|---|---|---|
| 19 | 218 | 7 days | 300 | 350000 | 20000 | 20 | 2.5 |
WAIC
Models by WAIC:| model | description | WAIC |
|---|---|---|
| sc.fm5.1 | lure + snow + temp + pass + lure * snow | 776.9206 |
| sc.fm4.2 | lure + snow + temp + pass | 777.3376 |
| sc.fm4.0 | lure + snow + temp | 777.4157 |
| sc.fm5.0 | lure + snow + temp + pass + temp * snow | 779.3633 |
| sc.fm3.0 | lure + snow | 789.1976 |
| sc.fm3.1 | lure + pass | 794.3763 |
| sc.fm2.0 | lure | 794.4962 |
| sc.fm2.1 | snow | 798.9835 |
| sc.fm2.3 | pass | 808.1089 |
| sc.fm1 | dot model | 808.2681 |
| sc.fm2.2 | temp | 810.0371 |
Reversible Jump MCMC:
sc.fm6.0 model: (reverse jump) lure + snow + temp + pass + temp * snow + lure * snow| cov | indicator_mean |
|---|---|
| beta.ind[1] | 0.55994 |
| psi.ind | 0.20366 |
| beta.ind[2] | 0.03103 |
| beta.ind[6] | 0.01370 |
| beta.ind[3] | 0.00933 |
| beta.ind[4] | 0.00576 |
| beta.ind[5] | 0.00000 |
| cov | indicator_mean |
|---|---|
| beta.ind[1] | 0.59545 |
| psi.ind | 0.23737 |
| beta.ind[4] | 0.23212 |
| beta.ind[2] | 0.04188 |
| beta.ind[3] | 0.01776 |
| beta.ind[6] | 0.01109 |
| beta.ind[5] | 0.00067 |
| cov | indicator_mean |
|---|---|
| beta.ind[1] | 0.66055 |
| psi.ind | 0.32491 |
| beta.ind[2] | 0.12267 |
| beta.ind[3] | 0.09812 |
| beta.ind[4] | 0.07297 |
Model summaries:
sc.fm1 summary:
dot model
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 395 | 52.677 | 33.185 | 17.00 | 89.00 | 0 |
| D | 395 | 29.837 | 18.796 | 9.63 | 50.41 | 0 |
| sigma | 817 | 0.799 | 0.808 | 0.56 | 1.04 | 0 |
| lam0 | 1389 | 0.602 | 0.504 | 0.26 | 0.93 | 0 |
N
D
sigma
lam0
sc.fm2.0 summary:
lure
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 144 | 70.582 | 41.228 | 18.00 | 124.00 | 0.00000 |
| D | 144 | 39.979 | 23.352 | 10.20 | 70.23 | 0.00000 |
| sigma | 336 | 0.784 | 0.798 | 0.51 | 1.05 | 0.00000 |
| beta0.lam0 | 1006 | -0.883 | -0.924 | -1.50 | -0.29 | 0.06932 |
| beta.lam0[1] | 16500 | -0.592 | -0.588 | -0.85 | -0.31 | 0.00000 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.1 summary:
snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 248 | 62.986 | 37.784 | 17.00 | 109.00 | 0.00000 |
| D | 248 | 35.676 | 21.401 | 9.63 | 61.74 | 0.00000 |
| sigma | 467 | 0.786 | 0.795 | 0.53 | 1.03 | 0.00000 |
| beta0.lam0 | 1031 | -0.740 | -0.756 | -1.33 | -0.13 | 0.14611 |
| beta.lam0[1] | 15469 | 0.256 | 0.253 | 0.13 | 0.38 | 0.00309 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.2 summary:
temp
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 362 | 57.989 | 39.280 | 19.00 | 99.00 | 0.00000 |
| D | 362 | 32.845 | 22.248 | 9.06 | 54.38 | 0.00000 |
| sigma | 722 | 0.800 | 0.804 | 0.57 | 1.03 | 0.00000 |
| beta0.lam0 | 1195 | -0.701 | -0.752 | -1.30 | -0.12 | 0.17566 |
| beta.lam0[1] | 16791 | -0.002 | 0.003 | -0.12 | 0.10 | 0.99920 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.3 summary:
pass
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 225 | 61.554 | 43.264 | 17.00 | 106.00 | 0.00000 |
| D | 225 | 34.865 | 24.505 | 9.63 | 60.04 | 0.00000 |
| sigma | 525 | 0.793 | 0.784 | 0.55 | 1.05 | 0.00000 |
| beta0.lam0 | 1082 | -0.708 | -0.722 | -1.32 | -0.13 | 0.17669 |
| beta.lam0[1] | 16500 | -0.763 | 5.059 | -167.64 | 152.71 | 0.99613 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm3.0 summary:
lure + snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 250 | 60.607 | 39.437 | 18.00 | 99.00 | 0.00000 |
| D | 250 | 34.328 | 22.338 | 10.20 | 56.07 | 0.00000 |
| sigma | 625 | 0.803 | 0.814 | 0.56 | 1.05 | 0.00000 |
| beta0.lam0 | 1183 | -0.840 | -0.864 | -1.42 | -0.25 | 0.08484 |
| beta.lam0[1] | 16500 | -0.502 | -0.502 | -0.77 | -0.23 | 0.00285 |
| beta.lam0[2] | 16500 | 0.203 | 0.197 | 0.08 | 0.33 | 0.03125 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
sc.fm3.1 summary:
lure + pass
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 264 | 63.269 | 44.457 | 18.00 | 111.00 | 0.00000 |
| D | 264 | 35.836 | 25.181 | 10.20 | 62.87 | 0.00000 |
| sigma | 540 | 0.806 | 0.818 | 0.56 | 1.06 | 0.00000 |
| beta0.lam0 | 991 | -0.877 | -0.900 | -1.47 | -0.26 | 0.08013 |
| beta.lam0[1] | 16500 | -0.591 | -0.582 | -0.86 | -0.31 | 0.00000 |
| beta.lam0[2] | 16500 | 0.467 | 3.810 | -161.01 | 157.95 | 0.99938 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
sc.fm4.0 summary:
lure + snow + temp
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 240 | 64.991 | 43.385 | 18.00 | 114.00 | 0.00000 |
| D | 240 | 36.812 | 24.574 | 10.20 | 64.57 | 0.00000 |
| sigma | 517 | 0.796 | 0.787 | 0.55 | 1.06 | 0.00000 |
| beta0.lam0 | 914 | -0.926 | -0.958 | -1.54 | -0.34 | 0.05754 |
| beta.lam0[1] | 16500 | -0.591 | -0.565 | -0.88 | -0.30 | 0.00290 |
| beta.lam0[2] | 16762 | 0.498 | 0.490 | 0.31 | 0.68 | 0.00000 |
| beta.lam0[3] | 16500 | 0.424 | 0.416 | 0.25 | 0.62 | 0.00000 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
sc.fm4.2 summary:
lure + snow + temp + pass
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 266 | 60.141 | 38.063 | 19.00 | 107.00 | 0.00000 |
| D | 266 | 34.064 | 21.559 | 10.20 | 60.04 | 0.00000 |
| sigma | 545 | 0.810 | 0.846 | 0.55 | 1.05 | 0.00000 |
| beta0.lam0 | 835 | -0.891 | -0.913 | -1.48 | -0.29 | 0.06240 |
| beta.lam0[1] | 16500 | -0.591 | -0.605 | -0.87 | -0.28 | 0.00214 |
| beta.lam0[2] | 16500 | 0.499 | 0.494 | 0.32 | 0.69 | 0.00000 |
| beta.lam0[3] | 16104 | 0.426 | 0.424 | 0.24 | 0.61 | 0.00061 |
| beta.lam0[4] | 16500 | -1.246 | -4.213 | -161.06 | 156.71 | 0.99751 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
sc.fm5.0 summary:
lure + snow + temp + pass + temp * snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 365 | 57.746 | 37.602 | 18.00 | 98.00 | 0.00000 |
| D | 365 | 32.708 | 21.298 | 9.06 | 54.38 | 0.00000 |
| sigma | 769 | 0.818 | 0.800 | 0.58 | 1.05 | 0.00000 |
| beta0.lam0 | 1200 | -0.849 | -0.845 | -1.49 | -0.26 | 0.09157 |
| beta.lam0[1] | 16125 | -0.604 | -0.601 | -0.88 | -0.30 | 0.00000 |
| beta.lam0[2] | 16136 | 0.463 | 0.457 | 0.25 | 0.66 | 0.00000 |
| beta.lam0[3] | 16500 | 0.458 | 0.449 | 0.25 | 0.65 | 0.00116 |
| beta.lam0[4] | 16500 | -0.380 | -17.236 | -165.29 | 154.06 | 0.99292 |
| beta.lam0[5] | 16500 | 0.062 | 0.059 | -0.10 | 0.21 | 0.83350 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
beta.lam0[5]
sc.fm5.1 summary:
lure + snow + temp + pass + lure * snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 226 | 62.738 | 36.452 | 20.00 | 110.00 | 0.00000 |
| D | 226 | 35.535 | 20.647 | 9.06 | 60.04 | 0.00000 |
| sigma | 493 | 0.787 | 0.787 | 0.52 | 1.02 | 0.00000 |
| beta0.lam0 | 1043 | -0.914 | -0.921 | -1.51 | -0.32 | 0.05628 |
| beta.lam0[1] | 16500 | -0.645 | -0.628 | -0.94 | -0.33 | 0.00091 |
| beta.lam0[2] | 16500 | 0.456 | 0.448 | 0.26 | 0.65 | 0.00000 |
| beta.lam0[3] | 16500 | 0.419 | 0.429 | 0.23 | 0.60 | 0.00000 |
| beta.lam0[4] | 16500 | 1.073 | -1.075 | -159.29 | 160.07 | 0.99996 |
| beta.lam0[5] | 17601 | -0.269 | -0.280 | -0.56 | -0.01 | 0.29938 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
beta.lam0[5]
