Year: Â Â Â Â Â Â 2018
Species: Â Â Â Â Coyote
Study Site: Â Â Mono creek
Metadata Summary:
| n_sites | N_detections | rep_period | model_agg_M | iterations | burnin | thin | state_buffer |
|---|---|---|---|---|---|---|---|
| 19 | 50 | 7 days | 300 | 350000 | 20000 | 20 | 2.5 |
WAIC
Models by WAIC:| model | description | WAIC |
|---|---|---|
| sc.fm2.2 | temp | 346.4278 |
| sc.fm1 | dot model | 347.3106 |
| sc.fm2.0 | lure | 349.2732 |
| sc.fm2.3 | pass | 349.5627 |
| sc.fm3.1 | lure + pass | 350.2545 |
| sc.fm2.1 | snow | 350.3202 |
| sc.fm4.0 | lure + snow + temp | 350.6276 |
| sc.fm5.1 | lure + snow + temp + pass + lure * snow | 351.5297 |
| sc.fm3.0 | lure + snow | 351.5687 |
| sc.fm4.2 | lure + snow + temp + pass | 351.8693 |
| sc.fm5.0 | lure + snow + temp + pass + temp * snow | 352.0501 |
Reversible Jump MCMC:
sc.fm6.0 model: (reverse jump) lure + snow + temp + pass + temp * snow + lure * snow| cov | indicator_mean |
|---|---|
| psi.ind | 0.12601 |
| beta.ind[3] | 0.00139 |
| beta.ind[1] | 0.00061 |
| beta.ind[2] | 0.00042 |
| beta.ind[4] | 0.00000 |
| beta.ind[5] | 0.00000 |
| beta.ind[6] | 0.00000 |
| cov | indicator_mean |
|---|---|
| psi.ind | 0.12596 |
| beta.ind[3] | 0.00121 |
| beta.ind[1] | 0.00061 |
| beta.ind[4] | 0.00061 |
| beta.ind[2] | 0.00048 |
| beta.ind[5] | 0.00042 |
| beta.ind[6] | 0.00030 |
| cov | indicator_mean |
|---|---|
| psi.ind | 0.16686 |
| beta.ind[3] | 0.00242 |
| beta.ind[1] | 0.00091 |
| beta.ind[2] | 0.00055 |
| beta.ind[4] | 0.00000 |
Model summaries:
sc.fm1 Â Â summary:
dot model
summary table
| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 975 | 50.068 | 20.370 | 8.00 | 97.00 | 0 |
| D | 975 | 31.104 | 12.654 | 4.97 | 60.26 | 0 |
| sigma | 2270 | 0.785 | 0.793 | 0.47 | 1.10 | 0 |
| lam0 | 4119 | 0.113 | 0.080 | 0.03 | 0.19 | 0 |
N
D
sigma
lam0
sc.fm2.0 Â Â summary:
lure
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 678 | 66.444 | 23.531 | 9.00 | 137.00 | 0.00000 |
| D | 678 | 41.278 | 14.618 | 4.97 | 84.49 | 0.00000 |
| sigma | 1975 | 0.781 | 0.787 | 0.47 | 1.10 | 0.00000 |
| beta0.lam0 | 2197 | -2.633 | -2.523 | -3.55 | -1.68 | 0.00000 |
| beta.lam0[1] | 16958 | -0.173 | -0.149 | -0.43 | 0.08 | 0.58882 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.1 Â Â summary:
snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 658 | 71.029 | 25.543 | 9.00 | 151.00 | 0.00000 |
| D | 658 | 44.126 | 15.868 | 4.97 | 93.19 | 0.00000 |
| sigma | 1989 | 0.767 | 0.752 | 0.44 | 1.08 | 0.00000 |
| beta0.lam0 | 1832 | -2.670 | -2.587 | -3.59 | -1.70 | 0.00000 |
| beta.lam0[1] | 16365 | -0.112 | -0.107 | -0.36 | 0.12 | 0.77924 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.2 Â Â summary:
temp
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 703 | 66.163 | 22.381 | 10.00 | 135.00 | 0.00000 |
| D | 703 | 41.103 | 13.904 | 6.21 | 83.87 | 0.00000 |
| sigma | 1989 | 0.780 | 0.798 | 0.47 | 1.10 | 0.00000 |
| beta0.lam0 | 1699 | -2.675 | -2.670 | -3.63 | -1.76 | 0.00000 |
| beta.lam0[1] | 16500 | 0.280 | 0.246 | 0.06 | 0.52 | 0.15513 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.3 Â Â summary:
pass
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 680 | 69.000 | 25.255 | 10.00 | 147.00 | 0.00000 |
| D | 680 | 42.865 | 15.690 | 6.21 | 91.32 | 0.00000 |
| sigma | 2021 | 0.763 | 0.760 | 0.44 | 1.08 | 0.00000 |
| beta0.lam0 | 1715 | -2.587 | -2.523 | -3.55 | -1.58 | 0.00000 |
| beta.lam0[1] | 15146 | -0.020 | -0.076 | -0.83 | 0.74 | 0.99625 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm3.0 Â Â summary:
lure + snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 649 | 69.114 | 25.255 | 10.00 | 148.00 | 0.00000 |
| D | 649 | 42.937 | 15.690 | 6.21 | 91.94 | 0.00000 |
| sigma | 1814 | 0.773 | 0.768 | 0.45 | 1.09 | 0.00000 |
| beta0.lam0 | 1769 | -2.661 | -2.563 | -3.60 | -1.70 | 0.00000 |
| beta.lam0[1] | 16911 | -0.158 | -0.145 | -0.42 | 0.10 | 0.67034 |
| beta.lam0[2] | 16500 | -0.095 | -0.093 | -0.34 | 0.15 | 0.83851 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
sc.fm3.1 Â Â summary:
lure + pass
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 860 | 61.803 | 30.428 | 10.00 | 125.00 | 0.00000 |
| D | 860 | 38.394 | 18.903 | 4.97 | 76.41 | 0.00000 |
| sigma | 2214 | 0.775 | 0.799 | 0.45 | 1.08 | 0.00000 |
| beta0.lam0 | 2856 | -2.560 | -2.501 | -3.48 | -1.60 | 0.00000 |
| beta.lam0[1] | 16500 | -0.173 | -0.159 | -0.43 | 0.08 | 0.61488 |
| beta.lam0[2] | 16020 | -0.027 | -0.036 | -0.79 | 0.80 | 0.99574 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
sc.fm4.0 Â Â summary:
lure + snow + temp
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 746 | 65.183 | 26.117 | 9.00 | 134.00 | 0.00000 |
| D | 746 | 40.494 | 16.225 | 5.59 | 83.25 | 0.00000 |
| sigma | 2418 | 0.780 | 0.783 | 0.47 | 1.10 | 0.00000 |
| beta0.lam0 | 2351 | -2.679 | -2.537 | -3.62 | -1.77 | 0.00000 |
| beta.lam0[1] | 16500 | -0.069 | -0.049 | -0.32 | 0.21 | 0.92436 |
| beta.lam0[2] | 16056 | -0.040 | -0.024 | -0.28 | 0.21 | 0.98819 |
| beta.lam0[3] | 16500 | 0.248 | 0.267 | 0.00 | 0.51 | 0.31964 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
sc.fm4.2 Â Â summary:
lure + snow + temp + pass
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 735 | 62.661 | 28.991 | 10.00 | 132.00 | 0.00000 |
| D | 735 | 38.927 | 18.011 | 6.21 | 82.00 | 0.00000 |
| sigma | 2357 | 0.775 | 0.771 | 0.46 | 1.09 | 0.00000 |
| beta0.lam0 | 2334 | -2.606 | -2.530 | -3.52 | -1.60 | 0.00000 |
| beta.lam0[1] | 16500 | -0.070 | -0.032 | -0.33 | 0.20 | 0.94921 |
| beta.lam0[2] | 16500 | -0.040 | -0.029 | -0.28 | 0.20 | 0.98463 |
| beta.lam0[3] | 16500 | 0.249 | 0.260 | -0.01 | 0.50 | 0.29748 |
| beta.lam0[4] | 15693 | -0.049 | -0.057 | -0.87 | 0.73 | 0.99232 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
sc.fm5.0 Â Â summary:
lure + snow + temp + pass + temp * snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 770 | 65.577 | 24.680 | 10.00 | 136.00 | 0.00000 |
| D | 770 | 40.739 | 15.332 | 6.21 | 84.49 | 0.00000 |
| sigma | 2063 | 0.761 | 0.732 | 0.44 | 1.07 | 0.00000 |
| beta0.lam0 | 2424 | -2.592 | -2.524 | -3.54 | -1.63 | 0.00000 |
| beta.lam0[1] | 16529 | -0.023 | 0.014 | -0.29 | 0.25 | 0.99313 |
| beta.lam0[2] | 16997 | -0.128 | -0.118 | -0.39 | 0.14 | 0.75455 |
| beta.lam0[3] | 16914 | 0.337 | 0.341 | 0.06 | 0.62 | 0.16245 |
| beta.lam0[4] | 16737 | -0.053 | -0.068 | -0.83 | 0.76 | 0.99530 |
| beta.lam0[5] | 16500 | 0.314 | 0.314 | -0.02 | 0.63 | 0.31044 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
beta.lam0[5]
sc.fm5.1 Â Â summary:
lure + snow + temp + pass + lure * snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 642 | 68.959 | 25.903 | 9.00 | 146.00 | 0.00000 |
| D | 642 | 42.840 | 16.092 | 4.97 | 90.08 | 0.00000 |
| sigma | 1887 | 0.768 | 0.766 | 0.45 | 1.09 | 0.00000 |
| beta0.lam0 | 1746 | -2.755 | -2.691 | -3.70 | -1.74 | 0.00040 |
| beta.lam0[1] | 16500 | -0.211 | -0.178 | -0.55 | 0.10 | 0.62849 |
| beta.lam0[2] | 16500 | -0.027 | -0.021 | -0.28 | 0.24 | 0.99250 |
| beta.lam0[3] | 16500 | 0.219 | 0.212 | -0.05 | 0.48 | 0.41594 |
| beta.lam0[4] | 15673 | -0.009 | 0.021 | -0.78 | 0.80 | 0.99770 |
| beta.lam0[5] | 17716 | 0.252 | 0.256 | 0.03 | 0.48 | 0.22412 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
beta.lam0[5]
