Year: 2017
Species: AmericanMarten
Study Site: Humphreys Basin
Metadata Summary:
| n_sites | N_detections | rep_period | model_agg_M | iterations | burnin | thin | state_buffer |
|---|---|---|---|---|---|---|---|
| 31 | 42 | 7 days | 300 | 350000 | 20000 | 20 | 2.5 |
WAIC
Models by WAIC:| model | description | WAIC |
|---|---|---|
| sc.fm5.1 | lure + snow + temp + pass + lure * snow | 291.3082 |
| sc.fm2.1 | snow | 294.6661 |
| sc.fm3.0 | lure + snow | 295.5946 |
| sc.fm4.0 | lure + snow + temp | 297.1479 |
| sc.fm2.0 | lure | 297.8240 |
| sc.fm1 | dot model | 298.2590 |
| sc.fm4.2 | lure + snow + temp + pass | 299.1571 |
| sc.fm3.1 | lure + pass | 299.7481 |
| sc.fm2.2 | temp | 299.8479 |
| sc.fm2.3 | pass | 300.1254 |
| sc.fm5.0 | lure + snow + temp + pass + temp * snow | 300.5409 |
Reversible Jump MCMC:
sc.fm6.0 model: (reverse jump) lure + snow + temp + pass + temp * snow + lure * snow| cov | indicator_mean |
|---|---|
| psi.ind | 0.12916 |
| beta.ind[1] | 0.02764 |
| beta.ind[2] | 0.00327 |
| beta.ind[3] | 0.00018 |
| beta.ind[4] | 0.00000 |
| beta.ind[5] | 0.00000 |
| beta.ind[6] | 0.00000 |
| cov | indicator_mean |
|---|---|
| psi.ind | 0.13001 |
| beta.ind[1] | 0.02697 |
| beta.ind[2] | 0.00291 |
| beta.ind[4] | 0.00115 |
| beta.ind[6] | 0.00048 |
| beta.ind[5] | 0.00042 |
| beta.ind[3] | 0.00018 |
| cov | indicator_mean |
|---|---|
| psi.ind | 0.17408 |
| beta.ind[1] | 0.04061 |
| beta.ind[2] | 0.00285 |
| beta.ind[3] | 0.00067 |
| beta.ind[4] | 0.00000 |
Model summaries:
sc.fm1 summary:
dot model
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 2516 | 33.478 | 20.738 | 9.00 | 57.00 | 0 |
| D | 2516 | 20.231 | 12.532 | 4.83 | 33.84 | 0 |
| sigma | 8354 | 0.787 | 0.782 | 0.58 | 1.00 | 0 |
| lam0 | 6988 | 0.112 | 0.090 | 0.03 | 0.19 | 0 |
N
D
sigma
lam0
sc.fm2.0 summary:
lure
summary table
| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 900 | 55.574 | 28.627 | 10.00 | 104.00 | 0.00000 |
| D | 900 | 33.583 | 17.299 | 6.04 | 62.85 | 0.00000 |
| sigma | 6274 | 0.792 | 0.791 | 0.59 | 1.00 | 0.00000 |
| beta0.lam0 | 1995 | -3.082 | -2.931 | -4.04 | -2.06 | 0.00000 |
| beta.lam0[1] | 15611 | -0.917 | -0.818 | -1.53 | -0.31 | 0.02407 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.1 summary:
snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 1827 | 37.682 | 23.455 | 11.00 | 65.00 | 0.00000 |
| D | 1827 | 22.772 | 14.174 | 6.65 | 39.28 | 0.00000 |
| sigma | 6967 | 0.788 | 0.775 | 0.59 | 1.00 | 0.00000 |
| beta0.lam0 | 4895 | -2.480 | -2.409 | -3.24 | -1.67 | 0.00000 |
| beta.lam0[1] | 16500 | 0.329 | 0.330 | 0.09 | 0.57 | 0.09465 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.2 summary:
temp
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 1571 | 39.971 | 22.553 | 10.00 | 71.00 | 0.00000 |
| D | 1571 | 24.155 | 13.629 | 6.04 | 42.91 | 0.00000 |
| sigma | 8128 | 0.796 | 0.798 | 0.59 | 1.00 | 0.00000 |
| beta0.lam0 | 3642 | -2.519 | -2.425 | -3.36 | -1.67 | 0.00000 |
| beta.lam0[1] | 16062 | -0.065 | -0.081 | -0.31 | 0.19 | 0.92543 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.3 summary:
pass
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 1547 | 40.647 | 21.954 | 10.00 | 72.00 | 0.0000 |
| D | 1547 | 24.563 | 13.267 | 6.04 | 43.51 | 0.0000 |
| sigma | 8085 | 0.794 | 0.787 | 0.59 | 1.00 | 0.0000 |
| beta0.lam0 | 3316 | -2.488 | -2.417 | -3.32 | -1.60 | 0.0000 |
| beta.lam0[1] | 16500 | -0.195 | -0.231 | -1.04 | 0.64 | 0.9093 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm3.0 summary:
lure + snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 1024 | 55.012 | 26.190 | 11.00 | 104.00 | 0.00000 |
| D | 1024 | 33.244 | 15.827 | 6.65 | 62.85 | 0.00000 |
| sigma | 6677 | 0.784 | 0.794 | 0.58 | 0.99 | 0.00000 |
| beta0.lam0 | 2136 | -3.036 | -2.838 | -4.03 | -2.03 | 0.00000 |
| beta.lam0[1] | 14386 | -0.822 | -0.685 | -1.39 | -0.24 | 0.04094 |
| beta.lam0[2] | 16500 | 0.281 | 0.293 | 0.04 | 0.51 | 0.17186 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
sc.fm3.1 summary:
lure + pass
summary table
| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 1016 | 53.724 | 25.255 | 10.00 | 99.00 | 0.00000 |
| D | 1016 | 32.466 | 15.262 | 6.04 | 59.83 | 0.00000 |
| sigma | 6633 | 0.793 | 0.786 | 0.58 | 0.99 | 0.00000 |
| beta0.lam0 | 2048 | -3.010 | -2.954 | -3.99 | -2.01 | 0.00000 |
| beta.lam0[1] | 15403 | -0.913 | -0.826 | -1.50 | -0.28 | 0.02146 |
| beta.lam0[2] | 15829 | -0.260 | -0.283 | -1.09 | 0.52 | 0.85796 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
sc.fm4.0 summary:
lure + snow + temp
summary table
| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 1332 | 51.900 | 26.117 | 11.00 | 95.00 | 0.00000 |
| D | 1332 | 31.363 | 15.783 | 6.65 | 57.41 | 0.00000 |
| sigma | 7557 | 0.783 | 0.784 | 0.58 | 0.99 | 0.00000 |
| beta0.lam0 | 2781 | -3.035 | -3.007 | -3.98 | -2.05 | 0.00000 |
| beta.lam0[1] | 16500 | -0.907 | -0.835 | -1.55 | -0.30 | 0.03893 |
| beta.lam0[2] | 16500 | 0.266 | 0.264 | 0.02 | 0.50 | 0.22376 |
| beta.lam0[3] | 16500 | -0.133 | -0.148 | -0.45 | 0.17 | 0.83086 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
sc.fm4.2 summary:
lure + snow + temp + pass
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 1247 | 50.534 | 27.600 | 11.00 | 94.00 | 0.00000 |
| D | 1247 | 30.538 | 16.679 | 6.04 | 56.20 | 0.00000 |
| sigma | 7736 | 0.785 | 0.781 | 0.58 | 0.99 | 0.00000 |
| beta0.lam0 | 2632 | -2.954 | -2.913 | -3.88 | -1.90 | 0.00000 |
| beta.lam0[1] | 15315 | -0.907 | -0.808 | -1.50 | -0.24 | 0.03823 |
| beta.lam0[2] | 16500 | 0.272 | 0.285 | 0.03 | 0.52 | 0.20312 |
| beta.lam0[3] | 16136 | -0.129 | -0.145 | -0.44 | 0.18 | 0.81783 |
| beta.lam0[4] | 16500 | -0.288 | -0.328 | -1.12 | 0.52 | 0.82609 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
sc.fm5.0 summary:
lure + snow + temp + pass + temp * snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 1146 | 51.302 | 25.551 | 11.00 | 96.00 | 0.00000 |
| D | 1146 | 31.002 | 15.441 | 6.04 | 57.41 | 0.00000 |
| sigma | 7484 | 0.781 | 0.802 | 0.58 | 0.99 | 0.00000 |
| beta0.lam0 | 2515 | -3.016 | -2.940 | -3.99 | -1.97 | 0.00000 |
| beta.lam0[1] | 16084 | -0.996 | -0.858 | -1.64 | -0.32 | 0.02628 |
| beta.lam0[2] | 16500 | 0.241 | 0.244 | -0.02 | 0.49 | 0.32365 |
| beta.lam0[3] | 16010 | -0.210 | -0.201 | -0.53 | 0.15 | 0.65479 |
| beta.lam0[4] | 16500 | -0.307 | -0.257 | -1.12 | 0.55 | 0.86411 |
| beta.lam0[5] | 16500 | -0.226 | -0.239 | -0.65 | 0.18 | 0.65996 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
beta.lam0[5]
sc.fm5.1 summary:
lure + snow + temp + pass + lure * snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 1055 | 38.494 | 22.302 | 10.00 | 68.00 | 0.00000 |
| D | 1055 | 23.262 | 13.477 | 6.04 | 41.09 | 0.00000 |
| sigma | 7847 | 0.787 | 0.790 | 0.59 | 1.00 | 0.00000 |
| beta0.lam0 | 3905 | -3.139 | -3.065 | -4.10 | -2.18 | 0.00000 |
| beta.lam0[1] | 15472 | -1.853 | -1.798 | -2.77 | -0.91 | 0.00000 |
| beta.lam0[2] | 15899 | 0.667 | 0.660 | 0.31 | 1.01 | 0.01174 |
| beta.lam0[3] | 15971 | -0.280 | -0.241 | -0.64 | 0.09 | 0.50219 |
| beta.lam0[4] | 15976 | -0.223 | -0.183 | -1.10 | 0.64 | 0.86027 |
| beta.lam0[5] | 15289 | 0.928 | 0.974 | 0.34 | 1.52 | 0.04792 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
beta.lam0[5]
