Year: 2017
Species: Bobcat
Study Site: Humphreys Basin
Metadata Summary:
| n_sites | N_detections | rep_period | model_agg_M | iterations | burnin | thin | state_buffer |
|---|---|---|---|---|---|---|---|
| 31 | 10 | 7 days | 300 | 350000 | 20000 | 20 | 2.5 |
WAIC
Models by WAIC:| model | description | WAIC |
|---|---|---|
| sc.fm2.2 | temp | 96.27115 |
| sc.fm4.0 | lure + snow + temp | 99.69043 |
| sc.fm4.2 | lure + snow + temp + pass | 102.39111 |
| sc.fm5.1 | lure + snow + temp + pass + lure * snow | 104.02602 |
| sc.fm2.1 | snow | 104.32978 |
| sc.fm5.0 | lure + snow + temp + pass + temp * snow | 105.10510 |
| sc.fm1 | dot model | 106.35869 |
| sc.fm3.0 | lure + snow | 107.13764 |
| sc.fm2.3 | pass | 110.07249 |
| sc.fm2.0 | lure | 110.13851 |
| sc.fm3.1 | lure + pass | 112.91774 |
Reversible Jump MCMC:
sc.fm6.0 model: (reverse jump) lure + snow + temp + pass + temp * snow + lure * snow| cov | indicator_mean |
|---|---|
| beta.ind[3] | 0.54261 |
| psi.ind | 0.19404 |
| beta.ind[2] | 0.00824 |
| beta.ind[1] | 0.00079 |
| beta.ind[4] | 0.00000 |
| beta.ind[5] | 0.00000 |
| beta.ind[6] | 0.00000 |
| cov | indicator_mean |
|---|---|
| beta.ind[3] | 0.53667 |
| psi.ind | 0.19650 |
| beta.ind[5] | 0.01945 |
| beta.ind[2] | 0.01018 |
| beta.ind[4] | 0.00242 |
| beta.ind[1] | 0.00152 |
| beta.ind[6] | 0.00115 |
| cov | indicator_mean |
|---|---|
| beta.ind[3] | 0.64485 |
| psi.ind | 0.27601 |
| beta.ind[2] | 0.01224 |
| beta.ind[1] | 0.00158 |
| beta.ind[4] | 0.00006 |
Model summaries:
sc.fm1 summary:
dot model
summary table
| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 484 | 56.634 | 8.117 | 3.00 | 151.00 | 0 |
| D | 484 | 34.224 | 4.905 | 1.81 | 91.25 | 0 |
| sigma | 16064 | 1.124 | 1.126 | 0.90 | 1.36 | 0 |
| lam0 | 2080 | 0.024 | 0.002 | 0.00 | 0.06 | 0 |
N
D
sigma
lam0
sc.fm2.0 summary:
lure
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 536 | 147.506 | 16.856 | 13.00 | 275.00 | 0.00000 |
| D | 536 | 89.138 | 10.186 | 7.25 | 165.58 | 0.00000 |
| sigma | 16500 | 1.166 | 1.178 | 0.95 | 1.40 | 0.00000 |
| beta0.lam0 | 744 | -6.038 | -6.558 | -7.58 | -4.56 | 0.00000 |
| beta.lam0[1] | 16500 | -0.268 | -0.081 | -0.89 | 0.39 | 0.96054 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.1 summary:
snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 546 | 148.340 | 104.032 | 11.00 | 269.00 | 0.00000 |
| D | 546 | 89.642 | 62.867 | 6.65 | 162.56 | 0.00000 |
| sigma | 17059 | 1.166 | 1.153 | 0.94 | 1.39 | 0.00000 |
| beta0.lam0 | 1020 | -6.648 | -6.964 | -8.36 | -4.92 | 0.00000 |
| beta.lam0[1] | 16500 | -1.394 | -1.098 | -2.51 | -0.22 | 0.09121 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.2 summary:
temp
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 595 | 151.418 | 118.548 | 12.00 | 268.00 | 0.00000 |
| D | 595 | 91.503 | 71.639 | 7.25 | 161.95 | 0.00000 |
| sigma | 16500 | 1.168 | 1.168 | 0.94 | 1.40 | 0.00000 |
| beta0.lam0 | 1223 | -7.134 | -7.347 | -8.89 | -5.38 | 0.00000 |
| beta.lam0[1] | 15479 | 1.492 | 1.376 | 0.76 | 2.23 | 0.00096 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.3 summary:
pass
summary table
| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 474 | 138.271 | 14.817 | 6.00 | 265.00 | 0.00000 |
| D | 474 | 83.558 | 8.954 | 3.63 | 160.14 | 0.00000 |
| sigma | 16500 | 1.159 | 1.170 | 0.94 | 1.39 | 0.00000 |
| beta0.lam0 | 786 | -5.936 | -6.574 | -7.55 | -4.16 | 0.00000 |
| beta.lam0[1] | 14154 | 0.261 | 0.311 | -0.93 | 1.46 | 0.91793 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm3.0 summary:
lure + snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 558 | 148.697 | 22.452 | 13.00 | 272.00 | 0.00000 |
| D | 558 | 89.858 | 13.568 | 7.25 | 163.77 | 0.00000 |
| sigma | 16371 | 1.167 | 1.161 | 0.95 | 1.40 | 0.00000 |
| beta0.lam0 | 1022 | -6.701 | -7.065 | -8.43 | -4.91 | 0.00000 |
| beta.lam0[1] | 16054 | -0.213 | -0.089 | -0.80 | 0.40 | 0.98624 |
| beta.lam0[2] | 15965 | -1.370 | -1.053 | -2.49 | -0.21 | 0.10523 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
sc.fm3.1 summary:
lure + pass
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 511 | 134.945 | 14.032 | 6.00 | 260.00 | 0.00000 |
| D | 511 | 81.548 | 8.480 | 3.63 | 157.12 | 0.00000 |
| sigma | 16500 | 1.161 | 1.170 | 0.94 | 1.39 | 0.00000 |
| beta0.lam0 | 798 | -5.987 | -6.604 | -7.64 | -4.25 | 0.00000 |
| beta.lam0[1] | 17073 | -0.265 | -0.199 | -0.90 | 0.39 | 0.98081 |
| beta.lam0[2] | 16088 | 0.248 | 0.288 | -0.96 | 1.43 | 0.90862 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
sc.fm4.0 summary:
lure + snow + temp
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 544 | 148.452 | 19.548 | 12.00 | 273.00 | 0.00000 |
| D | 544 | 89.710 | 11.813 | 7.25 | 164.98 | 0.00000 |
| sigma | 16500 | 1.169 | 1.176 | 0.94 | 1.40 | 0.00000 |
| beta0.lam0 | 1062 | -7.530 | -7.623 | -9.41 | -5.55 | 0.00000 |
| beta.lam0[1] | 15413 | -0.187 | -0.042 | -0.80 | 0.45 | 0.99677 |
| beta.lam0[2] | 16084 | -0.904 | -0.764 | -2.07 | 0.34 | 0.58869 |
| beta.lam0[3] | 15534 | 1.341 | 1.266 | 0.61 | 2.11 | 0.00551 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
sc.fm4.2 summary:
lure + snow + temp + pass
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 555 | 144.541 | 16.856 | 8.00 | 266.00 | 0.00000 |
| D | 555 | 87.347 | 10.186 | 4.23 | 160.14 | 0.00000 |
| sigma | 16420 | 1.166 | 1.165 | 0.95 | 1.39 | 0.00000 |
| beta0.lam0 | 1110 | -7.535 | -7.793 | -9.48 | -5.44 | 0.00000 |
| beta.lam0[1] | 16500 | -0.176 | -0.011 | -0.82 | 0.44 | 0.99891 |
| beta.lam0[2] | 16500 | -0.897 | -0.709 | -2.07 | 0.32 | 0.55799 |
| beta.lam0[3] | 16076 | 1.338 | 1.271 | 0.54 | 2.05 | 0.00367 |
| beta.lam0[4] | 16500 | 0.086 | 0.228 | -1.09 | 1.35 | 0.97247 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
sc.fm5.0 summary:
lure + snow + temp + pass + temp * snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 532 | 146.080 | 17.439 | 10.00 | 268.00 | 0.00000 |
| D | 532 | 88.277 | 10.538 | 5.44 | 161.35 | 0.00000 |
| sigma | 16500 | 1.167 | 1.166 | 0.95 | 1.40 | 0.00000 |
| beta0.lam0 | 1037 | -7.743 | -7.899 | -9.82 | -5.72 | 0.00000 |
| beta.lam0[1] | 16500 | -0.197 | -0.025 | -0.83 | 0.46 | 0.99579 |
| beta.lam0[2] | 14378 | -1.019 | -0.619 | -2.39 | 0.50 | 0.59088 |
| beta.lam0[3] | 13689 | 1.269 | 1.121 | 0.11 | 2.44 | 0.21206 |
| beta.lam0[4] | 16500 | 0.090 | 0.186 | -1.12 | 1.31 | 0.96952 |
| beta.lam0[5] | 14539 | -0.152 | -0.362 | -1.62 | 1.26 | 0.93075 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
beta.lam0[5]
sc.fm5.1 summary:
lure + snow + temp + pass + lure * snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 553 | 152.508 | 32.613 | 15.00 | 277.00 | 0.00000 |
| D | 553 | 92.161 | 19.708 | 9.06 | 167.39 | 0.00000 |
| sigma | 16512 | 1.165 | 1.168 | 0.94 | 1.39 | 0.00000 |
| beta0.lam0 | 1273 | -7.929 | -8.040 | -10.00 | -5.95 | 0.00000 |
| beta.lam0[1] | 16500 | -0.072 | 0.112 | -0.87 | 0.77 | 0.98502 |
| beta.lam0[2] | 16114 | -1.140 | -0.799 | -2.44 | 0.20 | 0.43507 |
| beta.lam0[3] | 15619 | 1.392 | 1.240 | 0.58 | 2.16 | 0.00297 |
| beta.lam0[4] | 16500 | 0.089 | 0.289 | -1.11 | 1.31 | 0.99335 |
| beta.lam0[5] | 16500 | 0.378 | 0.469 | -0.53 | 1.31 | 0.64080 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
beta.lam0[5]
