Year: 2019
Species: Bobcat
Study Site: Ritter Range
Metadata Summary:
| n_sites | N_detections | rep_period | model_agg_M | iterations | burnin | thin | state_buffer |
|---|---|---|---|---|---|---|---|
| 32 | 6 | 7 days | 300 | 350000 | 20000 | 20 | 2.5 |
WAIC
Models by WAIC:| model | description | WAIC |
|---|---|---|
| sc.fm3.1 | lure + pass | 74.77709 |
| sc.fm2.0 | lure | 75.30046 |
| sc.fm1 | dot model | 78.02406 |
| sc.fm2.2 | temp | 78.94650 |
| sc.fm3.0 | lure + snow | 80.49721 |
| sc.fm4.2 | lure + snow + temp + pass | 81.14192 |
| sc.fm5.1 | lure + snow + temp + pass + lure * snow | 81.80255 |
| sc.fm4.0 | lure + snow + temp | 82.47914 |
| sc.fm2.1 | snow | 82.72889 |
| sc.fm5.0 | lure + snow + temp + pass + temp * snow | 83.77662 |
| sc.fm2.3 | pass | 86.57164 |
Reversible Jump MCMC:
sc.fm6.0 model: (reverse jump) lure + snow + temp + pass + temp * snow + lure * snow| cov | indicator_mean |
|---|---|
| psi.ind | 0.12588 |
| beta.ind[1] | 0.01315 |
| beta.ind[3] | 0.00121 |
| beta.ind[2] | 0.00097 |
| beta.ind[6] | 0.00006 |
| beta.ind[4] | 0.00000 |
| beta.ind[5] | 0.00000 |
| cov | indicator_mean |
|---|---|
| psi.ind | 0.12969 |
| beta.ind[4] | 0.02097 |
| beta.ind[1] | 0.01358 |
| beta.ind[5] | 0.00212 |
| beta.ind[2] | 0.00091 |
| beta.ind[6] | 0.00085 |
| beta.ind[3] | 0.00073 |
| cov | indicator_mean |
|---|---|
| psi.ind | 0.17125 |
| beta.ind[1] | 0.02012 |
| beta.ind[2] | 0.00145 |
| beta.ind[3] | 0.00139 |
| beta.ind[4] | 0.00000 |
Model summaries:
sc.fm1 summary:
dot model
summary table
| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 323 | 40.030 | 3.923 | 2.00 | 117.00 | 0 |
| D | 323 | 22.476 | 2.203 | 1.12 | 65.70 | 0 |
| sigma | 14731 | 1.119 | 1.104 | 0.88 | 1.36 | 0 |
| lam0 | 1756 | 0.025 | 0.001 | 0.00 | 0.06 | 0 |
N
D
sigma
lam0
sc.fm2.0 summary:
lure
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 362 | 143.610 | 9.283 | 4.00 | 271.00 | 0.00000 |
| D | 362 | 80.637 | 5.212 | 2.25 | 152.17 | 0.00000 |
| sigma | 16500 | 1.169 | 1.175 | 0.93 | 1.39 | 0.00000 |
| beta0.lam0 | 688 | -7.560 | -7.842 | -9.71 | -5.20 | 0.00000 |
| beta.lam0[1] | 16894 | -1.899 | -1.474 | -3.48 | -0.35 | 0.12673 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.1 summary:
snow
summary table
| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 396 | 130.903 | 8.117 | 3.00 | 256.00 | 0.00000 |
| D | 396 | 73.502 | 4.558 | 1.68 | 143.74 | 0.00000 |
| sigma | 16609 | 1.167 | 1.162 | 0.94 | 1.39 | 0.00000 |
| beta0.lam0 | 522 | -6.582 | -7.201 | -8.35 | -4.42 | 0.00000 |
| beta.lam0[1] | 17160 | 0.289 | 0.350 | -0.39 | 0.95 | 0.79594 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.2 summary:
temp
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 337 | 133.631 | 7.826 | 3.00 | 264.00 | 0.00000 |
| D | 337 | 75.033 | 4.394 | 1.68 | 148.24 | 0.00000 |
| sigma | 16500 | 1.166 | 1.167 | 0.94 | 1.39 | 0.00000 |
| beta0.lam0 | 489 | -6.532 | -7.138 | -8.42 | -4.43 | 0.00000 |
| beta.lam0[1] | 16500 | -0.143 | -0.133 | -0.84 | 0.54 | 0.95035 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.3 summary:
pass
summary table
| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 281 | 107.917 | 5.092 | 2.00 | 250.00 | 0.00000 |
| D | 281 | 60.595 | 2.859 | 1.12 | 140.37 | 0.00000 |
| sigma | 15107 | 1.162 | 1.147 | 0.93 | 1.39 | 0.00000 |
| beta0.lam0 | 9 | -28.917 | -8.011 | -93.89 | -2.87 | 0.00000 |
| beta.lam0[1] | 9 | 23.722 | 2.173 | -0.71 | 89.78 | 0.10391 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm3.0 summary:
lure + snow
summary table
| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 335 | 137.681 | 8.991 | 3.00 | 265.00 | 0.00000 |
| D | 335 | 77.307 | 5.049 | 1.68 | 148.80 | 0.00000 |
| sigma | 16500 | 1.167 | 1.181 | 0.95 | 1.40 | 0.00000 |
| beta0.lam0 | 724 | -7.551 | -7.938 | -9.81 | -5.26 | 0.00000 |
| beta.lam0[1] | 16192 | -1.794 | -1.450 | -3.23 | -0.16 | 0.14956 |
| beta.lam0[2] | 16500 | 0.237 | 0.271 | -0.39 | 0.90 | 0.84106 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
sc.fm3.1 summary:
lure + pass
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 280 | 115.145 | 5.969 | 3.00 | 258.00 | 0.00000 |
| D | 280 | 64.654 | 3.351 | 1.68 | 144.87 | 0.00000 |
| sigma | 16500 | 1.163 | 1.166 | 0.93 | 1.38 | 0.00000 |
| beta0.lam0 | 753 | -8.888 | -8.923 | -11.79 | -5.57 | 0.00000 |
| beta.lam0[1] | 15623 | -1.896 | -1.680 | -3.42 | -0.26 | 0.13358 |
| beta.lam0[2] | 9888 | 2.528 | 2.166 | 0.42 | 4.57 | 0.10035 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
sc.fm4.0 summary:
lure + snow + temp
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 391 | 137.432 | 9.865 | 4.00 | 261.00 | 0.00000 |
| D | 391 | 77.168 | 5.539 | 2.25 | 146.55 | 0.00000 |
| sigma | 16500 | 1.167 | 1.149 | 0.93 | 1.38 | 0.00000 |
| beta0.lam0 | 815 | -7.797 | -8.041 | -10.06 | -5.48 | 0.00000 |
| beta.lam0[1] | 16059 | -1.990 | -1.616 | -3.64 | -0.40 | 0.10419 |
| beta.lam0[2] | 16102 | 0.198 | 0.233 | -0.51 | 0.84 | 0.89750 |
| beta.lam0[3] | 15960 | -0.258 | -0.161 | -1.28 | 0.77 | 0.93536 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
sc.fm4.2 summary:
lure + snow + temp + pass
summary table
| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 301 | 113.621 | 5.676 | 2.00 | 253.00 | 0.00000 |
| D | 301 | 63.798 | 3.187 | 1.12 | 142.06 | 0.00000 |
| sigma | 16500 | 1.163 | 1.166 | 0.93 | 1.39 | 0.00000 |
| beta0.lam0 | 740 | -9.145 | -9.232 | -12.15 | -5.82 | 0.00000 |
| beta.lam0[1] | 15422 | -1.996 | -1.614 | -3.62 | -0.39 | 0.11237 |
| beta.lam0[2] | 12822 | 0.074 | 0.049 | -0.62 | 0.74 | 0.98494 |
| beta.lam0[3] | 16500 | -0.274 | -0.245 | -1.29 | 0.75 | 0.89749 |
| beta.lam0[4] | 9615 | 2.524 | 2.090 | 0.43 | 4.62 | 0.11123 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
sc.fm5.0 summary:
lure + snow + temp + pass + temp * snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 287 | 100.856 | 5.092 | 2.00 | 243.00 | 0.00000 |
| D | 287 | 56.630 | 2.859 | 1.12 | 136.44 | 0.00000 |
| sigma | 16500 | 1.160 | 1.156 | 0.93 | 1.39 | 0.00000 |
| beta0.lam0 | 804 | -9.388 | -9.489 | -12.54 | -5.98 | 0.00000 |
| beta.lam0[1] | 12856 | -2.408 | -1.851 | -4.29 | -0.34 | 0.11103 |
| beta.lam0[2] | 13490 | 0.107 | 0.031 | -0.62 | 0.81 | 0.99543 |
| beta.lam0[3] | 15771 | -0.449 | -0.340 | -1.62 | 0.66 | 0.83334 |
| beta.lam0[4] | 6243 | 2.752 | 2.227 | 0.42 | 4.88 | 0.09780 |
| beta.lam0[5] | 13438 | 0.901 | 0.851 | -0.32 | 2.13 | 0.55237 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
beta.lam0[5]
sc.fm5.1 summary:
lure + snow + temp + pass + lure * snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 324 | 111.569 | 5.676 | 3.00 | 250.00 | 0.00000 |
| D | 324 | 62.646 | 3.187 | 1.68 | 140.37 | 0.00000 |
| sigma | 15305 | 1.162 | 1.173 | 0.93 | 1.39 | 0.00000 |
| beta0.lam0 | 1058 | -10.158 | -10.287 | -13.68 | -6.48 | 0.00000 |
| beta.lam0[1] | 9108 | -3.265 | -2.855 | -5.54 | -0.94 | 0.03254 |
| beta.lam0[2] | 10622 | 1.075 | 0.910 | -0.49 | 2.53 | 0.52128 |
| beta.lam0[3] | 14998 | -0.477 | -0.419 | -1.69 | 0.71 | 0.87765 |
| beta.lam0[4] | 10638 | 2.501 | 1.988 | 0.35 | 4.56 | 0.12582 |
| beta.lam0[5] | 10630 | 1.302 | 1.271 | -0.35 | 2.96 | 0.48466 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
beta.lam0[5]
